YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157759213
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.96
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	170	0.99
Transmembrane Helix	171	192	0.91
Cytoplasmic	193	209	0.88
Transmembrane Helix	210	232	0.90
Non-Cytoplasmic	233	239	0.79
Transmembrane Helix	240	261	0.94
Cytoplasmic	262	270	0.79
Transmembrane Helix	271	292	0.93
Non-Cytoplasmic	293	312	0.86
Transmembrane Helix	313	330	0.96
Cytoplasmic	331	346	0.86
Transmembrane Helix	347	368	0.90
Non-Cytoplasmic	369	374	0.82
Transmembrane Helix	375	396	0.94
Cytoplasmic	397	405	0.84
Transmembrane Helix	406	427	0.89
Non-Cytoplasmic	428	436	0.85
Transmembrane Helix	437	460	0.91
Cytoplasmic	461	522	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHISGKQCP MVLIIRLLLQ LSSTVSAELT RSMSVSYTPQ SIHDLEEYAS TNVTATVQFP  60
   61 KEEFEADNIE KYLLNVNSFH PETATAEYGE KLKTEQFRLN GQFYETETII TINGNLLGKT 120
  121 AMKVRLVPAA TWNETDFAAE ETMAKEETQR SSNRDSWLDV WVVRSAESRR LTVYFVISVV 180
  181 VLISMANVMM GCELDIESVI ATLKKPVAPA IGLFAQFIIM PLLSYLIAYA IFMPRGLYSM 240
  241 ALGLFVTGCS PGGGASNFWT LLLDGNLNLS VTMTFISTIC SLVMMPAWLY FLGHPFLQGF 300
  301 NSEAVIKVPY GKIASQLVTL ILPLLIGIAI KKFKPEWAAK ARKVMRPFVI FVMIFVVIFG 360
  361 SLTNLYMFRM LTGPALIGGL ALPWCGFMFG CFTALLTKRK PEDVTAIAVE TGIQNTGIAI 420
  421 LLLKASFGQP DADIGSLIPV IVAAFTPGPL LLGAAVHLTF KALRNRRQKS RCDSESIEKQ 480
  481 AVELIDASKL TEQQKLTISS SSLPNDQYES LLEHNTPIVT AK