YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187035306, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSLVAVFA LLAVASAEHF YVTNNNTGLA CIIVDGDFMF NLVFQEGNAT QKYNVLLNNT  60
   61 LNVDGDCNAV VNNQSVQTLS ITFNPAGQSA RYPKEWELNI VFGTSSNEAF KIIDYTLKTQ 120
  121 KTELVPYFGT FVRDEKDAGD VTATETNAYK CSTAKLGLVG GSTIDIKTAN IIAFAQVNGT 180
  181 VFPANQLYDV CYLDARTSDV VPIVVGACLA VLVIVVLVGY LIGRARAKRQ GYASV

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	202	0.99
Transmembrane Helix	203	223	0.94
Cytoplasmic	224	235	0.96