YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39585743, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRTMLIPLII VLSVIRQAST LVTCSRCETG TEECNYSRST CRGDFCYHAQ YYYGSETMST  60
   61 IQKGCVIGEV APEGCRVNHH GNVMCFCSDA DYCNSNFTSI SEIATTILPV QTCQPEKLNN 120
  121 MPKPRWTKPC AANYCTYIAA KTLMEVDNAN YTWSTKDCSL ENEFDFFPTL TVFNFYPGTC 180
  181 VWLNYGGQPD THACYGSDSL DSTLVFDTTT ATTECHVDYF NPRLPYTKSS GSCLGQFCFI 240
  241 SATSRGEVFR GCVNSQTVEG ATPLKIGYTR AYTGLEQWIC SKSYCNADLK SAELSWPPEL 300
  301 YLYRNISNLR EFNVFYIDAA SSSSIFLAIP LVFLINYCLF H

Type	Start	End	Confidence
Non-Cytoplasmic	1	313	0.75
Transmembrane Helix	314	340	0.76
Cytoplasmic	341	341	0.65