YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157756969
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.99
Transmembrane Helix	84	106	0.94
Non-Cytoplasmic	107	126	0.91
Transmembrane Helix	127	150	0.85
Cytoplasmic	151	158	0.71
Transmembrane Helix	159	180	0.93
Non-Cytoplasmic	181	186	0.84
Transmembrane Helix	187	208	0.91
Cytoplasmic	209	226	0.86
Transmembrane Helix	227	248	0.94
Non-Cytoplasmic	249	256	0.86
Transmembrane Helix	257	279	0.94
Cytoplasmic	280	315	0.93
Transmembrane Helix	316	337	0.85
Non-Cytoplasmic	338	356	0.86
Transmembrane Helix	357	378	0.83
Cytoplasmic	379	387	0.67
Transmembrane Helix	388	406	0.91
Non-Cytoplasmic	407	422	0.84
Transmembrane Helix	423	446	0.91
Cytoplasmic	447	459	0.73
Transmembrane Helix	460	483	0.87
Non-Cytoplasmic	484	494	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLYYGNNKKL DFRFSHFHLS NDIKPILVPS DPRTHKMDQM EMKPLNSTMI DETSEESSVN  60
   61 NSESGLVTPR DTWGRKVSKP IDRWYLVYII FTMHGMGMLM SWNMFITIAP QYYHDYWFNN 120
  121 TNYQDSFMSI IGVTSQIPNV GIMILNTIVV MVGFMMLRVV IPLIVNCFLI AVIVIMAIFV 180
  181 TPSPNTVTWF YIVTLVIIMA MNLANGIYQN SVYGIVADFP DNYINSLVIG NNLCGVFTSV 240
  241 LSIMTILISP NDIELNALLY FSISLAFMIV CLCSLYFLVR LPFYQYYMAK GVEARSEDSV 300
  301 DNPSLRQYWE CFRMCWVQLF NNFYVYFVSL LIFPAMMTDS VYSDPAHNKT SVFGDNLFYP 360
  361 ITTFLNFNLF AWIGSSLANY VQFPSAKYLW IGVVLRTIFI PYYLFCNYRP DTRLWPVLFE 420
  421 NEWWFTTGCT IMALTCGYMS SLALIYTPVE VPARYQKLSG MLASIFLMLG ILAGVASTPI 480
  481 AAWAVENIGT KKHK