YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157756769
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISYTLDVS QTNLQSFFSL LLRWRGSVWK AVFGQLAVWT AVFLLISCIY RYILSPSQQD  60
   61 VFEQLVRYFD NKLDANIPLT FLLGFFVSFV VARWGSILNG IGWIDDASLL FATYIRGADE 120
  121 ETRVIRRNLV RYLVLSQALV LRDISMQVRK RFPTMDTLAA SGLMTHEEMD ILDHIKDPYS 180
  181 RYWTSIQWSL NLVYECQKKG KVESYYLMNK IVDEIGKFRH GLASLLKYDW VPVPLVYPQV 240
  241 IFLAVRIYFM ICLIGRQFIV TGSNPSGIDL WLPITTMVQF LVYMGWMKVA EALLNPLGED 300
  301 DDDLECNYII DKNLITGLSI VDTMWKHDDT GYSMVEEHMA KTPAQKKDEF WGIDKIAPLY 360
  361 SMESAERSVH PLVGSASKIN LVKNKKEIVM TPHKNKLSEL DPTEQKTYLR RVNVSDHNAK 420
  421 HAKQRGLERA NSPDKCLSKM RSRSNGKFRT SANGSQNGVD LWTRAGDIEM NVAISNPNQV 480
  481 HPHSITVFPP DEPQTTSRH

Type	Start	End	Confidence
Cytoplasmic	1	30	0.85
Transmembrane Helix	31	54	0.90
Non-Cytoplasmic	55	74	0.86
Transmembrane Helix	75	97	0.81
Cytoplasmic	98	234	0.83
Transmembrane Helix	235	260	0.68
Non-Cytoplasmic	261	267	0.74
Transmembrane Helix	268	287	0.75
Cytoplasmic	288	499	0.74