YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187025903, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENTNATDF EWPTFEWCFD MEMWLHTMAT PQNVSTQMRT KYAHYKTFSY RYNGFFTLVL  60
   61 ILLGLSGSCL LVKQIYSSRV FSRRLAVHLG MICFWDMLYL LCCLSTYCIP SLIYSVTPIY 120
  121 GPFSYILFFL QPFASFCVSC TIWQVFAITL ERYLAVSSPL EQRTRKAKFG VGWICVGITI 180
  181 GAFILNLLPV PFENELVDCF EMGVDDQGAP TFKNHTMMKP YYDDRTRIYR FLVHFFPDLL 240
  241 FRAPTPIIVI GTLTVRTIQA CSQRSVGNFQ IGMRMNRNMP LRLSLLNFKF ILCNTLYMFN 300
  301 TILLELLEYG NMENGDYDGY INSFYLTDAS NMLLVVHSAT NWLLFYKFPS CRKKDVVSMT 360
  361 LSTSVKYNSV KIRIAEHIGK QISPFASTLG ADIIHKLCED VQEVRNIVHG DSQKESEQYE 420
  421 QETLVGVQFG QFVKDVFRWF GDRSSRISKK FMYKQYSSAA KTGKLNFNPT DWKNIRIIVI 480
  481 DTLVAHLLAH AKENNGKAKH PYSREDIEEC ATRVFNHVLS EMKNVALCAN VEERQKGRSE 540
  541 RFVRSNSTTT AMPMFREPPR KSHSVSMRFQ YSTSVDSVQI CEQQSLINNV

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.95
Transmembrane Helix	54	76	0.88
Cytoplasmic	77	91	0.84
Transmembrane Helix	92	114	0.86
Non-Cytoplasmic	115	126	0.79
Transmembrane Helix	127	148	0.93
Cytoplasmic	149	168	0.92
Transmembrane Helix	169	188	0.96
Non-Cytoplasmic	189	238	0.96
Transmembrane Helix	239	260	0.81
Cytoplasmic	261	282	0.82
Transmembrane Helix	283	304	0.80
Non-Cytoplasmic	305	323	0.94
Transmembrane Helix	324	345	0.64
Cytoplasmic	346	590	0.71