YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157768809
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFLLFWFLI LLLIFLAVTG KTLGLRELYV ETLIRIFEWG ATLSEESDVE EDSVIEEDEF  60
   61 PAQHKKIRRS SSSSDLGIIN REKSDIIDAK LHETNVTESK QSTVSVLVDD TLDFITAGME 120
  121 AVIEDQVTNR FSAAQLPSWN LLSRTKFTFH FLNWQLTALW IAGFMFRYYV LVPCRIALFV 180
  181 IAIVLMIVST SIIGLIPHAK TRKFLNRRCM LMCMRIYSRA FSSVIRFHDK ENRANKGGIC 240
  241 VANHTSPIDV MVLSCDNCYA MIGQKQGGFL GFLQTTLSRS EHHIWFERGE AGDRKQVMNR 300
  301 MREHVEDENK LPIIIFPEGT CINNTSVMMF KKGSFEIGST IYPIAVKYDT RLTDAFWNSS 360
  361 AQSYGRYLWS MMTSWAIICD VWYLPPMTRG DGEDSISFAK RVKRAIAKKG GLIDLEWDGA 420
  421 LKRERVSSKL VTLQQKLYFE RLARTTTLNS MLEEKSSDIL NIMQGITEEE RNELLKQIDE 480
  481 QDDEEEMIRK ISSLKPKFKL GEQDTDD

Type	Start	End	Confidence
Signal Peptide	1	20	0.83
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	150	0.82
Transmembrane Helix	151	170	0.91
Cytoplasmic	171	175	0.73
Transmembrane Helix	176	198	0.92
Non-Cytoplasmic	199	507	0.84