YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39585467, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	15	0.91
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	107	0.96
Transmembrane Helix	108	129	0.93
Cytoplasmic	130	145	0.88
Transmembrane Helix	146	166	0.93
Non-Cytoplasmic	167	175	0.81
Transmembrane Helix	176	193	0.88
Cytoplasmic	194	212	0.80
Transmembrane Helix	213	232	0.61
Non-Cytoplasmic	233	240	0.42
Transmembrane Helix	241	259	0.64
Cytoplasmic	260	278	0.82
Transmembrane Helix	279	301	0.87
Non-Cytoplasmic	302	309	0.69
Transmembrane Helix	310	328	0.91
Cytoplasmic	329	339	0.81
Transmembrane Helix	340	361	0.78
Non-Cytoplasmic	362	362	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWFILLSSC IAIHAQEGLL LDLHPAAGPQ FFEESLLGGT NGNKLKSEFD DVAVDSLMDP  60
   61 EGKPIHEPLR AHAMVLEEEL RKEAAEIQKI MWQSEEENKQ GDVTAATWLW TLFGCSLVVS 120
  121 SGIVPAFLLP ANIHDFLQSR EGQRRLNLVL AFGVGTLLSD VFLHLLPEAY DNHTDQISIG 180
  181 LWTLAGFLSF YFIEKIGAST EEGQHQASEM YRFLKLCAYM NLCANVVDNF AHGLAVGSSF 240
  241 LVSTKFGFLT TITILLHEIP HEISDFAILL RADFDRVAAI KAQFVTASAG VLGSCVALSL 300
  301 HTSNVPVIET LLPFTAGGFL NIALVQILPE LHEERSPIQS FKQWAMIVTG VLSMMCLNNL 360
  361 SF