YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157776057
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQNVHIAH DDEKDREKLL PLNNDDLKDE KDIASPSRPS FAFKCYVIAS MTFIWTAYTL  60
   61 TIKYTRSSVE PEQMYSATTV VFCAEVLKLI ITFAMFYKEC NFNNAQFLEK VNQYFLNAPK 120
  121 ELAKMSVPSF AYALQNNLDF VGLSNLDAGV YQVTTQLKVV STALFMMLFL GRKFSVRRWM 180
  181 AICLLMFGVA FVQMNNAPAA ESKQSGEKAE NYIIGLSAVL ATCVTAGFAG VWFEKMLKDG 240
  241 GSTPFWIRNM QMYSCGVISA SIACLVDYSR ISEKGFFFGY TDKVYAVVIL LGVGGLYISL 300
  301 VMRYLDNLYK SMASAVSIIL VVVLSMLIFP DVFVGMYFVL GTMFVVLAVL LYNSVNE

Type	Start	End	Confidence
Cytoplasmic	1	40	0.85
Transmembrane Helix	41	62	0.74
Non-Cytoplasmic	63	74	0.63
Transmembrane Helix	75	97	0.62
Cytoplasmic	98	175	0.78
Transmembrane Helix	176	194	0.92
Non-Cytoplasmic	195	211	0.87
Transmembrane Helix	212	233	0.95
Cytoplasmic	234	249	0.87
Transmembrane Helix	250	271	0.86
Non-Cytoplasmic	272	283	0.82
Transmembrane Helix	284	301	0.96
Cytoplasmic	302	307	0.78
Transmembrane Helix	308	329	0.87
Non-Cytoplasmic	330	333	0.78
Transmembrane Helix	334	355	0.88
Cytoplasmic	356	357	0.82