YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187028858, gi...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFETAVFI VQNLPKDGPV KTSTDEKLNF YGLFKQSTHG KCDVPKPSFF DVQGVYKWNA  60
   61 WKKLESMTSE EAKNAYVEAI VQKIRDVQKT YKTEEWMKGD VYDLLAPKFE ILGILETKKT 120
  121 EDESEKQEDV LIEQIQKEDC QPKNETVKIQ ENEESMNSSA CVLSDNEYAD ALDDEIQSRS 180
  181 SSFTEPHTSS RHRVTRQGSP SLRNTCHRLE KELKVITESI DNLGKAVEER HNLLISLMKK 240
  241 STVYILVPKS TSWKTVMFFV FWPFVANFLL RWLRRFLGYV

Type	Start	End	Confidence
Non-Cytoplasmic	1	252	0.69
Transmembrane Helix	253	273	0.78
Cytoplasmic	274	280	0.54