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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157748741
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNQILLLVVL LLAWSSEAVP SGVVNLRPKQ NVNSVGIGDR FGGIGTSSDE SDHFKLLAAD  60
   61 GDSLLVGARN AVYNLSLSTL SVNHKIDWKP PAEHIEECIM KGKSKTDCQN YIRVLARKSA 120
  121 GVSLVCGTHA FSPKCREYSV TDYGIRNTRQ FDGQGISPYD PKHNSSALYI PQTNQLFAAT 180
  181 VTDFVGNDAL IYRKTIDETP ATKASANIRT QSYDARVLNA PNFVATFAYK EHVYFWFREI 240
  241 ASEAIDNNEE SQIYARVARV CKNDKGGARP ANERWTSYLK ARLNCSLPSG SSPFYFNELK 300
  301 AVSDPIDAGN NDHVVYTVFS TPDSDVRMSA VCKFSMKKIR EEFDNGTFKH QNNAQSMWMA 360
  361 YNRNEVPKPR PGSCTPDSTK LPENTVSFIL HHPLLHRPIP AVSAPLLVEG ADRADLTQIT 420
  421 VLPRVKAVGG QNYDILFIGT SDGKVLKVVE VDGNATVIQA ATVFQRGVPV VNLLTTKENV 480
  481 VIVSSDEIAS LPVHNCVQQT SCSKCVQLQD PHCAWDSSIA RCVHGGSWTG DQYIQNMVFG 540
  541 QSEQCPEGII VREVFDDSDS DGAQPEAVSR NVYAKEHSTI TVILVAAVAS LISLIIGAFI 600
  601 GIRVNRWAAT SEPHRSASST SGSDYDSFGR ARLTRHDSLT TATKVDHGFV PQSKQSMDAT 660
  661 SLVMSMNATH HPMSMSQHGS GINTPSRDKN AIVTSINQNT LPRDYKVKKV YL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle