YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157756647
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAAWLPF ARAAAIGWVP ISRQPMPQAP VAIQAKDLAV DHVSDEKLAI NISGRRFETW  60
   61 KNTLEKFPET LLGSNEKEFF YDEDTGEYFF DRDPDIFRHI LTFYRTGKLH YPRHECLVAY 120
  121 DEELSFFGIM PDLISDCCYE DYKDKKRENQ ERLMEERVET AEANTAKLSL QQKMWAAFEN 180
  181 PHTSSIALVF YYVTGFFIAV SVLCNIVETI PCWYQDNMAV TCGEAYEEQF FVVDTACVII 240
  241 FTIEYFLRLF AAPDRCKFMR SIMSVIDVIA IMPYYVSLGL TDNKDVSGLF VTLRVFRVFR 300
  301 IFKFSRHSQG LRILGYTLKS CASELGFLVF SLAMAIIIFA TIMYYAEKKV EATRFTSIPS 360
  361 AFWYTIVTLT TLGYGDMVPS TIMGKIVGGI CSLSGVLVIA LPVPVIVSNF SRIYHQNQRA 420
  421 DKRRAQKKAR LARIRIVKNA SGQALFNKKK AHEARMQAFE QGQLSFDALR DEDIFEIQHH 480
  481 HLLQCLEKAT EREFVESEVM FEGGRNTPPP SETASLRGTT KRKRRLCCVS KENEEMDELD 540
  541 RETRVTFNQN LNQICELPKP EDVEQNQNDH RNNDKICVSQ L

Type	Start	End	Confidence
Cytoplasmic	1	187	0.82
Transmembrane Helix	188	210	0.84
Non-Cytoplasmic	211	229	0.81
Transmembrane Helix	230	250	0.80
Cytoplasmic	251	257	0.85
Transmembrane Helix	258	278	0.82
Non-Cytoplasmic	279	324	0.71
Transmembrane Helix	325	346	0.92
Cytoplasmic	347	354	0.66
Transmembrane Helix	355	375	0.84
Non-Cytoplasmic	376	385	0.51
Transmembrane Helix	386	410	0.84
Cytoplasmic	411	581	0.71