YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157756531
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIAWLLCSL FLLTAVTPLS RHPKLLLISF DGFRYDLLKE GLVPNIYKWA TMSTWFTSGV  60
   61 KSQYVTYTAP NHMSIATGMY EEEHGIVGNY FFDSQTKKMF DYFNSTGKEG AVNASQADFW 120
  121 YNADPIWLTN ERWESSRRSA SFYWPNGESS FPYLPHKPKV AKPWTIVGDL KSWMQDADDV 180
  181 IDAFTREKEP VNFLAWYVAE PDHTLHGNGF HNKEIEKTLK QLDDLFLYFI EKFDDNNLGS 240
  241 DVNIILTADH GHAEIQDHKH VMCVKNFVSG AGFEMGDHMI YPHSEEIGKQ IYANLTEAVK 300
  301 QHGYDVNIHW KEDVPERWHY KNNSRIGKIV FEPKIGSAIS FSCTMEQMEK QYGENGTTKF 360
  361 NSSTHGQDPD RPEMRAFLMM RGPEFSENFT IADIPSNVDL YNLMCHVLGI TPTENNGTME 420
  421 IVKRALKENR YMPMTHGFVF NQITDSWSFS LILIPSMCIV VAFFAYGCKN TVMKSDPNWG 480
  481 RSDNVQGYRP LSNRINEGFE LNDDEDDDEG DGLRANLDLE RGARRPQAGG GALGSLNNGT 540
  541 VAMSGLLDEM SDDDI

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	446	0.99
Transmembrane Helix	447	468	0.82
Cytoplasmic	469	555	0.86