YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157762086
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.77
Transmembrane Helix	63	84	0.92
Non-Cytoplasmic	85	141	0.76
Transmembrane Helix	142	160	0.93
Cytoplasmic	161	173	0.69
Transmembrane Helix	174	191	0.94
Non-Cytoplasmic	192	198	0.72
Transmembrane Helix	199	219	0.94
Cytoplasmic	220	440	0.91
Transmembrane Helix	441	460	0.89
Non-Cytoplasmic	461	469	0.71
Transmembrane Helix	470	492	0.91
Cytoplasmic	493	501	0.79
Transmembrane Helix	502	532	0.67
Non-Cytoplasmic	533	568	0.50
Transmembrane Helix	569	593	0.86
Cytoplasmic	594	605	0.50
Transmembrane Helix	606	628	0.90
Non-Cytoplasmic	629	635	0.45
Transmembrane Helix	636	659	0.89
Cytoplasmic	660	662	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMYPGMPFG EEQCSSDKCS FETFWTSEEK CAYIKCNPDA CEGGGYLEWS MYVKCQHDTG  60
   61 LRVLYIILAV IWLAFCFIVV STIADDFFCP SISGIVTHLR MSESVAGVTF LAFGNGAPDV 120
  121 LGSFTSVLTT AKPKADLALG DLFGTSIFVT TVVLAIVILT KSFRVAIIPT LRDLIFYLIT 180
  181 LAFIVFCFLK FDRVEVWMSA TFIGIYVVYV ITVIIFGCYR SRRKKINLKK KSLESGEEDL 240
  241 SRPASAASVV PIYGEVDKKK ASMSALFNFM IKFSQFVKGL AIPNNQRKIH DSNNNEKKMG 300
  301 IPNIAFDGSL DSDISAKPKI SDIFQQNTFE TDVESETTLD EIEDSGDEGR EEEFAYAHHT 360
  361 VFTSHDQISL AATEIPEIKL VTWRSWDWVW DLFNHLKSWP SREEFSEMNI FVKIISIIRI 420
  421 VPVFFFKATI PSNEMSWCKP LCILHCFASI QLVLFAFQIT NLKIFAGSPG LWLYALAVSA 480
  481 ILALLALYFL PLSKEPKYHK EVYSYLGFVM SIAWIYANSN EIISAVTMFG VVTGLSQELL 540
  541 GLTVMSWSDC IGDIVADIAV VKQGYPKMAM AAVIGGPLFN LLIGFGVPFT IAAAQGKQID 600
  601 LIINPVYRIL LLFLGISLVT TFVALFIQRF TVRWPHAVLL ILIFVTFVVF VCLAEFHVLE 660
  661 WK