YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187032501, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVSGHGRESS GYHHAAVVEV GAMVLQNMFS ALSFLHYRKD DDFVDRLSYF YTSSFLIMMA  60
   61 VLVSFKQFGG RPLECWVPAQ FTASWEAYTE MYCWAQNTYW VPIDQDIPVD ISEREYRQIS 120
  121 YYQWVPFFLL LQAFLYYIPC LMWRLMSDKS GIRLNDIVQM ATEKENIEPD YRIRTIESLS 180
  181 RHIESALRYQ HTATSRTQYT LHRVFKCFNM RYYESYVTGM YLATKIMYVG NILTNLVLVN 240
  241 KFLETDEYSI YGLGVLRDLL FGRTWIESGN FPRVTLCDFE VRVLGNNQRH SVQCVLVINI 300
  301 FNEKIFILIW LWFTLLFVAS TLDMLYWFSI SMFHRDRFRF VLRHLELTSD PDKPELFRKE 360
  361 KRKQVEHFLR TYLKVDGVLV LRMIALHAGV MFCTEITDAL WKRYLSQHPE NLIDDDSSLI 420
  421 TFARAQSIRR KRNDSSNSDG QNHQRLGRIL SHRSTGGSFR LNRTQSTNRS LTTENKATPT 480
  481 GTNAAASPNT PPPVPNSRFG KVKPRRTVVT INSQQNDART SPDPIQEMSR LENVPLAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.70
Transmembrane Helix	15	35	0.80
Cytoplasmic	36	46	0.79
Transmembrane Helix	47	68	0.89
Non-Cytoplasmic	69	123	0.88
Transmembrane Helix	124	145	0.85
Cytoplasmic	146	307	0.83
Transmembrane Helix	308	330	0.92
Non-Cytoplasmic	331	538	0.70