YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157758515
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.90
Transmembrane Helix	32	55	0.59
Non-Cytoplasmic	56	104	0.59
Transmembrane Helix	105	123	0.47
Cytoplasmic	124	130	0.60
Transmembrane Helix	131	150	0.92
Non-Cytoplasmic	151	158	0.53
Transmembrane Helix	159	179	0.69
Cytoplasmic	180	189	0.87
Transmembrane Helix	190	212	0.90
Non-Cytoplasmic	213	220	0.79
Transmembrane Helix	221	242	0.93
Cytoplasmic	243	262	0.94
Transmembrane Helix	263	286	0.90
Non-Cytoplasmic	287	302	0.93
Transmembrane Helix	303	325	0.90
Cytoplasmic	326	332	0.89
Transmembrane Helix	333	355	0.92
Non-Cytoplasmic	356	361	0.85
Transmembrane Helix	362	384	0.90
Cytoplasmic	385	395	0.78
Transmembrane Helix	396	418	0.85
Non-Cytoplasmic	419	426	0.66
Transmembrane Helix	427	448	0.89
Cytoplasmic	449	530	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFNVPVINR DSELLKQEAK KWLEQQDNQK KCVLVIVSIA LLLDNMLYMV IVPIIPKYLR  60
   61 DIHNYAVTFE GYHNETQRLA NGTYLVREVG GRIEYLDEEL ELGWLFASKA LLQIFVNPFS 120
  121 GYIIDRVGYE IPMILGLCTM FFSTAIFALG KSYGVLLFAR SLQGFGSAFA DTSGLAMIAD 180
  181 RFTEENERSA ALGIALAFIS FGCLVAPPFG SVLYSLAGKP VPFLILSFVC LADAIAVFMV 240
  241 INPHRRGTDS HGEKVQGTPM WRLFMDPFIA CCSGALIMAN VSLAFLEPTI TTWMAEVMPE 300
  301 TPGWLVGVIW LPPFFPHVLG VYVTVKLLKS FPGYTWAIAM IGLAMEGIAC FAIPYTNSVM 360
  361 QLVIPLSFVC FGIALIDTSL LPMLGHLVDT RHVSVYGSVY AIADISYSLA YAFGPIIAGW 420
  421 IVTNWGFTAL NIIIFITNVG YAPVLFLLRK VHSYDALSGN APATQNGEMT QLNNTPGYSQ 480
  481 VGGKTETTVF NDSYQGWDDQ QSYQNQATIP NHGIPQTEYP AGFDPLNPQW