YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39583467, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSNPKSN LLHTIWTNTE HILYKALFNR FTLIAFYAFW FLFGVLVLRK TQNAITAVRY  60
   61 VKTHGESVSL SSIEQSREFA DLIKTLDKNF PRPPAIFLLN QYALNMTDNF LCNTGTLEGV 120
  121 HERFIFVTLD TVARDTIKKR WPQIQQFHWP TPSLYKPFSF AEGAYQTIYL LRSNLALALI 180
  181 KKGKSFWMMQ QDTFWRKNIF DMNYEDNMAY DAIFDQLGSE EESSMRKEWV NGANFFIRAN 240
  241 NDTQLFFESM SEKLAHWYTP DMGIMIQQCH TWKKPVCAYI PHNVVYSWEW MFTEQKDPPY 300
  301 LMQLDCETDG GSKLMQLGRY GFHFVNQDGS CNDQKVALAK AKMENGTVEV QMTKTLPSWG 360
  361 RLQFKAYWYI VDYMLWTPII GEYLKPYLAM IGFILMITI

Type	Start	End	Confidence
Cytoplasmic	1	25	0.73
Transmembrane Helix	26	48	0.80
Non-Cytoplasmic	49	399	0.81