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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LMLN_CAEBR
Protein type: Transmembrane
Type Confidence: 0.61
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRLIFQYF AYSFLVFLPF INTLPCSYQN PRIEDVLLEV PIEHHHPHRH RRDSENPTET  60
   61 PPDLQKFAPL RIQLHYDKSI QNLTAEVQHF VNTTLLPEAV GYWENALRVR PMKTPIRLRR 120
  121 KCISSFYYYK QGMRNVACDK GCRERTTCGE ADIPNDHLLD CLACNNTDDC QTTGEMGEGV 180
  181 KESDFILYVT AHNSKRCEGP ETLSYAAHCQ QEADFDRPIA GNVNLCPSAL SVHNHDYEIL 240
  241 TSTVKHEILH ALGFSVGLYA FFRDKDGKPR TKRNRYGRPT SLNKQRGYYD WDKNTITTVL 300
  301 REEWWTGEGK VIHPIQMMVT PKVREEARRH FGCDKLEGAE LENQGGEGTV LTHWEKRAYE 360
  361 NEAMTGTHTQ NPVYSRLTLA FLEDTGWYQP NYEVAEDLHW GKQLGCDFAM KSCGEWIHQK 420
  421 RILGEDAYPY CSDIKHDGTK SMAITRCTSQ RDSLALCNLI PFQKELPPQY RNFMSLPGVN 480
  481 PDGAKYYGGS VEMADYCPFL QEFEWKMPEK EHKDSRCELE GNGKEGEDIL EVYGENSKCF 540
  541 EFPKPWTERK CGRIRVLSHY MAGCYEYQCT NGTLYVGSYN ATDMYPCYAE NQKVHIKKVV 600
  601 DGWLREGSLI CPKCSDYCSS CGPPIVIPDY IGDPELDEPC FAFSKFSVFG LFSCYLAILY 660
  661 IR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle