YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39583079, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAITASQE RSMLHQNNTA PRSTQLNSGT KKNNGFLSTL ASYLTSTAKS DPKPIVIPKK  60
   61 PLMTSWDDVD FVKLNKLVCN VLYEPNNHYE PLISEIERVV GRRREHCFYA VVGTILVLIL 120
  121 LHDAVGAITA FMTLLVPTFM TISSITTTSE NSEIQNRENF FIRYWTVYAV FVTGESFLAS 180
  181 LIQWDLRLFR LVFMSMCLST RIPALAASYA KIIGVVTSIR DTIDSNNFES PKSESKKTS

Type	Start	End	Confidence
Cytoplasmic	1	106	0.99
Transmembrane Helix	107	135	0.82
Non-Cytoplasmic	136	160	0.53
Transmembrane Helix	161	184	0.81
Cytoplasmic	185	239	0.50