YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39582763, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLVQYACKK FFWNRNEDFA GAAYNEFQRK EAATNAGNMS FHDEEGGSDK KTIENGRNVE  60
   61 EKDELIENPI VVKTRKLIRS SIYVLFLNVF LCSYILFGSN IFTLRHTSTE KEASFLDSVL 120
  121 FCITTISTIG YGNIVPFDDQ GKILCILYCL IGIPLFFMTV ATNSMLVLEI CNIIHRSFSL 180
  181 KEAINKTDLR WYTSAILLAT HCFIGSLIFS FWIDELPFLD AFYFSFISIT TIGYGDYSPT 240
  241 PEGPFQYAVV MIYLCTGVAT MLIFFSSLQR GIMWIHYYGR KVSDSEEAEI WYGGQMMTVK 300
  301 DLVSLVAQKF GSTPEKLREV MHDLDKILEV ACQEAENNEE DDEEAECRRL FMNAESPVSP 360
  361 PMPRKKTVFL SGSSEGDDYQ ATIHSFTSIN QRSIPKETEN AIRALGDLQH HLRKPSVRAR 420
  421 SPHHSRMIAK PASDTNIEAK EHITSLDLRK MAHRVHSDGR LLVQNTV

Type	Start	End	Confidence
Cytoplasmic	1	81	0.72
Transmembrane Helix	82	104	0.87
Non-Cytoplasmic	105	112	0.66
Transmembrane Helix	113	135	0.71
Cytoplasmic	136	143	0.43
Transmembrane Helix	144	168	0.86
Non-Cytoplasmic	169	188	0.46
Transmembrane Helix	189	213	0.86
Cytoplasmic	214	218	0.41
Transmembrane Helix	219	237	0.55
Non-Cytoplasmic	238	244	0.77
Transmembrane Helix	245	266	0.90
Cytoplasmic	267	467	0.87