YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3510651
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGACVLLLL GLWLQLSLAF IPVEEEDPAF WNRQAAQALD VAKKLQPIQK AAKNVILFLG  60
   61 DGMGVPTVTA TRILKGQMND KLGPETPLAM DQFPYVALSK TYNVDRQVPD SAGTATAYLC 120
  121 GVKGNYRTIG VSAAARYNQC NTTRGNEVTS VMNRAKKAGK SVGVVTTTRV QHASPAGAYA 180
  181 HTVNRDWYSD ADLPADAQTY GCQDIATQLV NNMDIDVILG GGRKYMFPEG TPDPEYPHDA 240
  241 SVNGVRKDKR NLVQEWQAKH QGAQYVWNRT ELLQAANDSS VTHLMGLFEP ADMKYNVQQD 300
  301 PTKDPTLEEM TEAALQVLSR NPQGFYLFVE GGRIDHGHHD SKAYMALTEA VMFDNAIAKA 360
  361 NELTSELDTL ILVTADHSHV FSFGGYTLRG TSIFGLAPSK ASDKKSYTSI LYGNGPGYVL 420
  421 GGGSRPDVND SISEDPSYRQ QAAVPLSSET HGGEDVAVFA RGPQAHLVHG VQEETFVAHV 480
  481 MAFAGCVEPY TDCNLPAPSG LSDAAHLAAS APSLALLAGA MLLLLAPALY

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	503	0.99
Transmembrane Helix	504	526	0.82
Cytoplasmic	527	530	0.66