YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39582303, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	29	0.79
Non-Cytoplasmic	30	45	0.76
Transmembrane Helix	46	66	0.70
Cytoplasmic	67	85	0.91
Transmembrane Helix	86	105	0.96
Non-Cytoplasmic	106	113	0.82
Transmembrane Helix	114	139	0.84
Cytoplasmic	140	151	0.87
Transmembrane Helix	152	170	0.96
Non-Cytoplasmic	171	179	0.85
Transmembrane Helix	180	201	0.95
Cytoplasmic	202	291	0.87
Transmembrane Helix	292	313	0.78
Non-Cytoplasmic	314	333	0.51
Transmembrane Helix	334	368	0.68
Cytoplasmic	369	481	0.55
Transmembrane Helix	482	504	0.86
Non-Cytoplasmic	505	522	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFRSLLSY TALLIGLISF AADSINYVFT SKYIQVFFDE YHLPPSYLKI VQILFLVWNA  60
   61 VNDPMMGYMQ DLGCCGMKWI MDRRKVVLYA GPVFAASFLL FWFPWSTSVG WVTALHLLVS 120
  121 LFIYDTLLTL VLSAYCGLCV ENSRNHQDRV RVIVYGEVFT IIAGLLIYPL ETMPHTNEHY 180
  181 WLFQTCCVVV ACVSAALMAY SGYHLKVERP VNEDHQLEKF QEGETVVEKK EDTWRNALQV 240
  241 SWQVAKEPRF ICLVGAQFFR ILRFMANENF LIVFTESLLV NNGFFEKNSG TLGLFYILAR 300
  301 SCGSVSLGWF GVMNKYFQIL FLVLWAPTNR FGTQAVIQSL NILSIFIVIF VLYAGMDNIT 360
  361 AVAIFIILEN AISRCGWQGF YIVVAGEVVD TDMKQNNRKT PFSTIIFTLK ALFNKPADQL 420
  421 APVLVLSLFL EQGGYPQLTV PCQNFYEDTF SNSTLPFNST SIETTTFSGL PSAQQCTNYN 480
  481 HWMFLALAIF PAICAMGESI FVAIDQYWRR YVHGKTGHLG DD