YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157760485
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDSRHDTS SWNYFDIILS FTHFVGFVTI CLNGYFFNTF KDGLGWPTAL NQTGDWNQNE  60
   61 VETMGKKGDQ LHAFLMVLAF IYFQGEALLA YRVYRHDAKM VSKLLHTALH ITAIGLAITA 120
  121 LCVIIISTNN TGYNNFTSVH SWIGVCLIAV YLVQFSFGFC TYLCPCSPGK YRALLMPVHR 180
  181 AVGVSCFVVA CVQCCLGFGN VLLEGQPACF GDLSCQNRIE YVGAFCVLSI ILYTLLVLAL 240
  241 IIPKPWRRVK TPDELK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	37	0.88
Non-Cytoplasmic	38	70	0.97
Transmembrane Helix	71	94	0.87
Cytoplasmic	95	106	0.89
Transmembrane Helix	107	128	0.93
Non-Cytoplasmic	129	140	0.85
Transmembrane Helix	141	163	0.91
Cytoplasmic	164	180	0.85
Transmembrane Helix	181	202	0.93
Non-Cytoplasmic	203	220	0.92
Transmembrane Helix	221	242	0.95
Cytoplasmic	243	256	0.97