YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39581861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSAKSGGD SEERKSFLDK PNSSKTANSA VSGVTEKSAK TEKSAKRSEQ KTDRSTKSGK  60
   61 SATTTKTENG NQSMVSQKST ASTQSVGRQG PKMSDGTEFG SGPYGYIFSF IYLGVLWGLA 120
  121 IILAIVLVYF NYSRLDPQFP TYFGDGSFLG GVPKATFDPN PRRFLEDGNL NVMEWNIYNF 180
  181 DSYVNYLIRY KQLLKNYSGG DSVKKRVAGK NLCSNQTLTE AEACRFDRFT GFGECVLSHE 240
  241 NLEHGFGFSK GQPCIMLKLN KIVGWAPNFE VNETQTCTPG NLCCGEGIQF ECKSDDDVQF 300
  301 EFFPKTGIPS CYFPYMNQNG YEQPFQMVKL ANITFNRDTT IECYPKDNSL RTLASGKVNE 360
  361 ARFHIKMSDE SVDEAKRS

Type	Start	End	Confidence
Cytoplasmic	1	107	0.89
Transmembrane Helix	108	130	0.92
Non-Cytoplasmic	131	378	0.89