YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157760769
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQQTDEQIR MNTSAVAISV VGIISSLVTC FTNVILLKTY MKKKNDMALF YYRFTLDVIL  60
   61 GALVAASLLF AVLYSYFSSE LSEYQNFIFY LSLPASNVGA CRSIVTLSVA IERMVAAYAP 120
  121 IFFHNYRHRC PTVIILILAV IFGLTEDVVL YEFCNFHLNV PKNCATFGCA INSCFLYYWT 180
  181 THKSTIFALN FVFSLLLCIK LFIINNVMKT GKVELSRANR LALIDSAMVF MFDFMPSFIA 240
  241 NQFSTTQFFS FQNIGPYGTV AKLLGCAVEA FLVYRKMQKG KKSSTVENSR TMGRNSKRKI 300
  301 TEVRKMPFFA LVPIYMDIQL VNMCIDLWFG GLATTTNTTT WAISFVLQNL EVQDKIHQEL 360
  361 DRIIGSDRLI TTADKNDLPY LNAYINESQR FTNLVPLNVP HATTRDTPER FLDENGKLKK 420
  421 VEELIPFSIG KRQCLGEGLA RMELFLFISN FFNRYQISPS KNGLPSMDKS SISRIETRLF 480
  481 SAVLKRRR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.94
Transmembrane Helix	15	37	0.92
Cytoplasmic	38	53	0.83
Transmembrane Helix	54	74	0.92
Non-Cytoplasmic	75	86	0.83
Transmembrane Helix	87	111	0.79
Cytoplasmic	112	129	0.80
Transmembrane Helix	130	150	0.88
Non-Cytoplasmic	151	184	0.93
Transmembrane Helix	185	204	0.95
Cytoplasmic	205	220	0.89
Transmembrane Helix	221	240	0.93
Non-Cytoplasmic	241	253	0.85
Transmembrane Helix	254	274	0.63
Cytoplasmic	275	313	0.63
Transmembrane Helix	314	330	0.30
Non-Cytoplasmic	331	488	0.61