YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157760089
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	30	0.72
Non-Cytoplasmic	31	91	0.65
Transmembrane Helix	92	112	0.88
Cytoplasmic	113	119	0.47
Transmembrane Helix	120	141	0.88
Non-Cytoplasmic	142	147	0.52
Transmembrane Helix	148	170	0.92
Cytoplasmic	171	181	0.55
Transmembrane Helix	182	202	0.94
Non-Cytoplasmic	203	246	0.61
Transmembrane Helix	247	266	0.80
Cytoplasmic	267	316	0.72
Transmembrane Helix	317	336	0.90
Non-Cytoplasmic	337	345	0.59
Transmembrane Helix	346	368	0.86
Cytoplasmic	369	386	0.80
Transmembrane Helix	387	408	0.67
Non-Cytoplasmic	409	414	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKINWDTVR TAVAFFLLGL CNNYGYVIML SAAEDILSQQ HGKNKTTTID ACMPNITVRE  60
   61 CKPPVAEVLV SDNLPSLLVK LSFPFFMDRF PFGLRVAVVC MLQAASYFVV AFSVSIPMSL 120
  121 AGVVLVSLGG GLGEITFLGL SAHYQRIAIA GWSSGTGMAG LLGSFSYAFL TEPHMANLTP 180
  181 KVALLIQLFI PVLFAFAYFI LLEKPESVYS PSLSPKTWIV PKGYDDFVVS EHRVPQRQLT 240
  241 PWERVQLIVP MLHLMIPLAF VYVGEYMINQ GMTQQIVFDC KHGFNLSLHS QYRWYQVLYQ 300
  301 FGVFASRSSI KLIELPMWVL YLLPILQLSN MLFFFFDALY WFVPHIGIIF ALIVFEGLFG 360
  361 GSSYVNTFHK IHNKVAPDVR EYCLSAASMG DSIGVNFAAG VSIPLHYWMC GRPA