YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157758721
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.99
Transmembrane Helix	82	103	0.92
Non-Cytoplasmic	104	109	0.73
Transmembrane Helix	110	129	0.91
Cytoplasmic	130	137	0.79
Transmembrane Helix	138	157	0.95
Non-Cytoplasmic	158	163	0.69
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	191	0.96
Transmembrane Helix	192	211	0.94
Non-Cytoplasmic	212	428	0.99
Transmembrane Helix	429	450	0.92
Cytoplasmic	451	468	0.92
Transmembrane Helix	469	488	0.91
Non-Cytoplasmic	489	498	0.88
Transmembrane Helix	499	521	0.88
Cytoplasmic	522	529	0.76
Transmembrane Helix	530	548	0.94
Non-Cytoplasmic	549	554	0.74
Transmembrane Helix	555	576	0.89
Cytoplasmic	577	583	0.82
Transmembrane Helix	584	603	0.94
Non-Cytoplasmic	604	609	0.75
Transmembrane Helix	610	630	0.92
Cytoplasmic	631	705	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHDDSHIL SQLGILDSHE RSPKRDTAPT DKKFVDVKLT ASVSDDDEDD DEDLVFDRNN  60
   61 LLSSNKRQNA SLIRGRADNQ TIRFLILLIL FLIAGLVSTA TSLSICSVRH EVIGCLWTCI 120
  121 GMFCGAWATK LTASRSNLML FLLATLLTLL VNLFFAFSFS FLFALRGFFV GATLYGGALV 180
  181 WFAFWRKQPR KLLILLLVFS AGGLLAMSVK TSVFSEATSS LADMSIVTRS IQNTVSRLKR 240
  241 AAAVPEETDK TLLPFVAVVD NSTQKIINDT ADSTVKKPEV ATGTLEKSKT KTEMNAEKEK 300
  301 EVEEKKSETE EARGSVSFFG SQTGRSSKKI EKSTKIENVP NFLTKKFPIR KKNLKIFGNF 360
  361 KKMRENNPNQ FQHFNKKRIQ TATVTLSLFR SPQSIVSPPY PANCPSDSLF LTGNVASAEE 420
  421 TISSFVKTFV SFGVIIYFIS YALCCLPCGL KPDSKVKKLE SDSIVGLGMR LRILIAAVQT 480
  481 IVGFLHQIKH FHSSNQPNAS SDHILVCVFV VITLLVMAFG GHKVGTLEAV IVSYLLTVFG 540
  541 EVVLLFSANS QFGNIVSNCG LTAIWVSLFF VVEIFLQVRA TVQLAYFLIA WIVGRAIACL 600
  601 FALEPVFEGL EHSFCVLFTI SIGILLFYIV RMLQKSKRLK EILDNSSAPI VAHSTGDGEY 660
  661 ISLTAQDVLD DDDLIDDDEM DRSSMDLDYE LEQLGLEPVG ASSRS