YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187023381, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISLTVAVD ALKPIVPCSL LSLSMVPFAS CAIVIGGASW IVPSHIAQKL DNMLYKSYMR  60
   61 LCLFVFENLS GVEITVYGSK EVLNKSGAPE NALLVSNHQS NVDWIIPVML AARHGDGGNE 120
  121 QAFRVMVKNS IHLVPMFGWY IFQHGYIYVR RFGEFIGAPV LRQLNWLNQS MPPYWLLIFP 180
  181 EGTRLTAKKK KLVKSSNQFL ESNGRQPMQN VLCPRSGGLQ LALDNLSTLD AIYDVTVMYG 240
  241 QMRVPERRGM APGMFDFCCG PQTFKHLHIH LNRIPIEQVP KEKLSLRNWT IDRFVEKDRI 300
  301 IDEFYSDSPE GGTPLPCVPI SQTLPSTLFF SAALLAPFFS RTIGRIYLLT IASSPLLIAW 360
  361 LHIRKCV

Type	Start	End	Confidence
Signal Peptide	1	31	0.66
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	342	0.85
Transmembrane Helix	343	363	0.71
Cytoplasmic	364	367	0.64