YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157748535
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHSVSRDDF IWTLTEQPHM SRREAIVKKY PEVKQLFGVD PSLKYVVSSM VLFQIFMCWM  60
   61 LQDADWILIL LEAYFCGGII NHAMTLAIHD ISHNTAFGNK HPLKNRFFGM WANLPIAVPI 120
  121 SISFKKYHVE HHRYLGEDGL DTDVPTAFEA KFFTTSPKKL LWLALQPFFY AFRPLIIYKK 180
  181 APTDMEILNA VIQISFDLGI LYFFGLKSLI YLFFGTIISM GLHPSAGHFI SEHYAFKEDQ 240
  241 ETFSYYGLWN LCTFNVGYHV EHHDFPYIPG RDLPKLKALA PDFYDNLHQH TSMMDILTEF 300
  301 VMNPAMGPYA RLKRKPRVDQ EFYGNYQLFE YVEGFLHHIG VYRLQKFAGN VFDLNNNEKK 360
  361 LN

Type	Start	End	Confidence
Cytoplasmic	1	42	0.80
Transmembrane Helix	43	61	0.55
Non-Cytoplasmic	62	65	0.45
Transmembrane Helix	66	88	0.76
Cytoplasmic	89	106	0.51
Transmembrane Helix	107	125	0.66
Non-Cytoplasmic	126	197	0.39
Transmembrane Helix	198	223	0.73
Cytoplasmic	224	362	0.53