YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39580728, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRTLMFVAS RSLRASAISR TITKERSEAN RLMEQIVEDL KTKGTEFVIP GRDSFARQES  60
   61 AKVFEKLVAC GVKSEFLLDA NTKNASLFKT VVSQPAVSFE IIETLVNVGY VTFEDAIRLL 120
  121 AIFPSDLLRH GAASITSNIE ALSASGISTP RSIASAIKRC PPLLFARDPQ EMQRLAHEIG 180
  181 GFFSKKQASH LISRCPQILL KPIEEIEEKY EYIFYQMGVE SEDVAECIGW IDELSLDDMV 240
  241 DRHRFLLATG KFTTPDPKRP QIRLENPKLQ RILDSNEEDF AVNVARVTME EWVVYKALRV 300
  301 KETINEQKER KFDRVKPSKR KAYERRHKEK RELAEHVFDV SAV

Type	Start	End	Confidence
Signal Peptide	1	17	0.80
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	343	0.99