YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39580694
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.79
Transmembrane Helix	127	145	0.76
Non-Cytoplasmic	146	150	0.53
Transmembrane Helix	151	170	0.61
Cytoplasmic	171	351	0.69
Transmembrane Helix	352	373	0.86
Non-Cytoplasmic	374	379	0.69
Transmembrane Helix	380	400	0.84
Cytoplasmic	401	871	0.86
Transmembrane Helix	872	894	0.86
Non-Cytoplasmic	895	900	0.67
Transmembrane Helix	901	920	0.82
Cytoplasmic	921	948	0.89
Transmembrane Helix	949	970	0.91
Non-Cytoplasmic	971	975	0.82
Transmembrane Helix	976	996	0.91
Cytoplasmic	997	1003	0.69
Transmembrane Helix	1004	1024	0.91
Non-Cytoplasmic	1025	1033	0.76
Transmembrane Helix	1034	1056	0.88
Cytoplasmic	1057	1073	0.86
Transmembrane Helix	1074	1097	0.88
Non-Cytoplasmic	1098	1103	0.79
Transmembrane Helix	1104	1128	0.85
Cytoplasmic	1129	1187	0.62
Transmembrane Helix	1188	1215	0.77
Non-Cytoplasmic	1216	1239	0.45
Transmembrane Helix	1240	1262	0.89
Cytoplasmic	1263	1271	0.43
Transmembrane Helix	1272	1292	0.91
Non-Cytoplasmic	1293	1299	0.41
Transmembrane Helix	1300	1322	0.88
Cytoplasmic	1323	1387	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKRKNDGD APSSSSSCSQ KPSTSDDYSV SFVKSEEDDV ATTIRDKTAS LKSNATHFSA  60
   61 ASAAKGGMLC CRSLFSRRRI LRSRTVRVGY GPVGHDANVT FSPNTVCNQK YNIFSFVPIV 120
  121 LFQQFKFFLN LYFLLMACSQ FIPAIQIGAP ITYWGPLGFV LTITLIREAF DDFVRYLRDR 180
  181 DLNSEKYEKL TRDGTRVEVR SADIEVGDVI IMHKDRRVPA DVVLLRTTDK SGACFIRTDQ 240
  241 LDGETDWKLR IPVPYTQHLP NEADIMELNC EVYAEKPQKD IHAFVGTLKI TVDDSVQDGS 300
  301 LNVENVLWAN TVVASGTAVG IVVYTGRETR SVMNTTLPES KVGLLDLEVN NLTKLLFIFV 360
  361 LMLSSVMVVM KGLDNLWYRY LMRFILLFSY IIPISLRVNL DMAKLFYSWQ IGRDKHIPDT 420
  421 VIRSSTIPEE LGRISFLLSD KTGTLTKNEM HFKKIHLGTV AFNSDAFEEV AQHVKSGYAG 480
  481 RMAKHSFAAK LQNAVEAIAL CHNVTPIFEN GETSYQAASP DEVALVKWTE TVGVRLASRD 540
  541 LHAMTLSVQL PGGQTLTKNF QILHVFPFTS ETKRMGIIVK DETTDEVTLL MKGADTVMSG 600
  601 MVQYNDWLDE ECSNMAREGL RTLVVARKPL SPAELEAFDR AYHAAKMSIS DRSQNMANVV 660
  661 NRMLERDLQL LCLTGVEDRL QDQVTTSLEL LRNAGIKIWM LTGDKLETAI CIAKSSGLFS 720
  721 RSDNIHVFGN VHNRTDAHNE LNNLRRKTDV ALVMPGSALN VCLQYYEAEV AELVCACTAV 780
  781 VCCRCSPEQK AQIVQLLRKY RAPLRVAAIG DGGNDVSMIQ AAHAGIGIDA NEGKQASLAA 840
  841 DFSITQFSHV CRLLLVHGRF CYKRSCALSQ FVMHRGLIIS TMQAIFSCVF YFASVSLYQG 900
  901 VLMVAYSTCY TMLPVFSLVV DRDVTASNAL TYPELYKELG KGRSLSYKTF CIWVLISLYQ 960
  961 GAVIMYGALL VFDADFIHVV SISFSALIVT ELIMVAMTVH TWHWAMLLAQ ALSLGLYMIS1020
 1021 LIVFDQYFDR QFVLSWVFIS KTTAITAVSC LPLYIVKALR RKFSPPSYAK IKMGIVLTVS1080
 1081 CYIASFSPSI ALFYSFIAHD PVRIILFFLG SFFWLVSLLI SSLAWLGLST VLPNTFLISL1140
 1141 GVCIVAQELS RVAYFMLLKK AQKGLNKITR HGQISVAPGV SDLHNARHML ALVCGLGMGV1200
 1201 ISALFYTMNA FATFAGPGTI GLPMALETGH IDSNRAGKYL PLCYVLSAIL LTLFHVAWTI1260
 1261 MVWDTCHKIG RFPTAFVPGA AAVVSHLFVA FLSSLNSRGF YILVFSVQFL VLLICIAYCN1320
 1321 VIMGGTIQSF VTAIGQSFVD AFTLKQIRNF VEERKMRTQQ RQAVPDEPMT ERGGASDEPG1380
 1381 TSNTVDA