YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187027184, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWFGFGGSS DTPSSSVEVS SQPVDLSAGM NFSVPGFDAP AAAPSSPVPD HSPFPAAPVL  60
   61 ALDQLKSAGV GVSRQMTPYV QMDPSMFASQ QPQYIMPEGG VAGKGKFEFA LGHIGWAVGG 120
  121 AFGVGCARGA LGELMNPETR KMAGKPWMTR MVNATMKHGS GFAQPAGAIV FMYSALEIGL 180
  181 RSVRAEDELN GFGAGALTGA IYRSPHGLKA SGIGALVGLG IATAWTLSST DSRQRLSEMF 240
  241 SNN

Type	Start	End	Confidence
Cytoplasmic	1	108	0.71
Transmembrane Helix	109	132	0.75
Non-Cytoplasmic	133	155	0.58
Transmembrane Helix	156	176	0.69
Cytoplasmic	177	205	0.48
Transmembrane Helix	206	228	0.84
Non-Cytoplasmic	229	243	0.48