YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187039993, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDVQLGIC ANILGIAMLM LVVLFHYLSA NQKNKTDQII YVMSSQPRAT GVQPGPSFSP  60
   61 TTSPISQRNF RYEPARSGYT SPGGYSTYST STTADRVGCL TAVRMSAFAK LSRFTRRLVH 120
  121 IRQMDFEFAL WQMLYLLIQP SKVYKNFIYR KRTKDQFARD DPAFLVLLSL SLLFSSIFYA 180
  181 YALGLSKTGF FTFFLWSVFV DCIAVGVVIA TILWWVSNRF LRKVRDQDVE WGYCFDVHLN 240
  241 AFFPMLILLH VIVPILYPTL IDSPSFLSVF LGNTFWFLAA CYYVYITFLG YTALPILHKT 300
  301 QYFLYPISFI FMFFVATLTA GWNISKTALY FYHSRAEPHK FAPQHNSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.71
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	161	0.81
Transmembrane Helix	162	183	0.93
Non-Cytoplasmic	184	192	0.82
Transmembrane Helix	193	216	0.94
Cytoplasmic	217	236	0.87
Transmembrane Helix	237	257	0.90
Non-Cytoplasmic	258	273	0.72
Transmembrane Helix	274	294	0.87
Cytoplasmic	295	301	0.86
Transmembrane Helix	302	324	0.91
Non-Cytoplasmic	325	348	0.95