YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187040830, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPNEHGFAY ILIFLLLSPS TQTNRDANRL FEDLIADYNK LVRPVSENGE TLVVTFKLKL  60
   61 SQLLDVHEKN QIMTTNVWLQ HSWMDYKLRW DPAEYGGVEV LYVPSDTIWL PDVVLYNNAD 120
  121 GNYQVTIMTK AKLTYNGTVE WAPPAIYKSM CQIDVEFFPF DRQQCEMKFG SWTYGGLEVD 180
  181 LQHRDKHLEK EIEEDVEGVD GPTKEIVWVV DRGIDLSDYY PSVEWDILNV PGKRHSKRYP 240
  241 CCESPFIDIT YEIHLRRKTL FYTVNLIFPS VGISFLTALV FYLPSDGGEK ISLCISILIS 300
  301 LTVFFLLLVE IIPSTSLVIP LIGKYLLFTM VLVTLSVVVT VVTLNVHYRS PTTHTMPKWM 360
  361 KRLFVDFLPK YLLMTRPQPP GHHSKPNRKF DPRASTFSIG VNHILGQNSE LLSPRLNSNK 420
  421 EESSFTLPRD NSPVRSAVES VAYIADHLKN EEDDKQVIED WKYISVVMDR IFLITFTLAC 480
  481 AFGTVVIIAR APSIYDNTPA LA

Type	Start	End	Confidence
Signal Peptide	1	23	0.87
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	260	0.98
Transmembrane Helix	261	283	0.92
Cytoplasmic	284	290	0.90
Transmembrane Helix	291	313	0.89
Non-Cytoplasmic	314	324	0.76
Transmembrane Helix	325	348	0.89
Cytoplasmic	349	470	0.97
Transmembrane Helix	471	491	0.94
Non-Cytoplasmic	492	502	0.87