YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3450834
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.98
Transmembrane Helix	27	48	0.95
Non-Cytoplasmic	49	78	0.91
Transmembrane Helix	79	102	0.88
Cytoplasmic	103	108	0.93
Transmembrane Helix	109	130	0.90
Non-Cytoplasmic	131	135	0.86
Transmembrane Helix	136	156	0.87
Cytoplasmic	157	170	0.71
Transmembrane Helix	171	193	0.83
Non-Cytoplasmic	194	210	0.84
Transmembrane Helix	211	231	0.80
Cytoplasmic	232	331	0.97
Transmembrane Helix	332	353	0.94
Non-Cytoplasmic	354	360	0.80
Transmembrane Helix	361	380	0.92
Cytoplasmic	381	394	0.88
Transmembrane Helix	395	416	0.91
Non-Cytoplasmic	417	425	0.78
Transmembrane Helix	426	447	0.87
Cytoplasmic	448	459	0.86
Transmembrane Helix	460	483	0.89
Non-Cytoplasmic	484	491	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTAPDHREP QEQGESRKWY EMTASEFYVY VVAFMCGVSM MMPVNAVFSA PAYIMTYYRY  60
   61 AMQDPEAVPL YTNFWNNVMT YYNLIGIVTS LIMEPLTLLS WFRRIPMKVR LLGGLVILIV 120
  121 EIIVLMVVPA RGTSEAGAVA TICCTGFIGG FGKSIFESTT YGMFGAFPSS FTSTMMGGVG 180
  181 MSGVLTSLLQ IIVKAALPDS YEGVKKQSKI YYGLDVGIQG MTFVALILLR FNSFAQNYFG 240
  241 DLGAVKSKVD AGKLSAEALC HTDEHPTHDK EGRNSSSGKE VPALGEVQTA AAKSEGPDAV 300
  301 EESSWPHEVE GPTSNEILVA TAIFSTLRRV KWMFVACAFN FLITLFLFPG IAVGMFPDSK 360
  361 WFSTIAVFIF NVFDVLGRFS PSLKLMWPRS YKQRWIIVAA SFARVIFVPL LLLHSYHYIP 420
  421 GEAYGYVMEV IFGFSNGYVG SMALVLGPQS KGIDNDGKRF VAGTLMGISI LVGGTIGTVL 480
  481 SIMTQTIRAT Y