YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39579851, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLIVALLG LATTVNSLYF HIAETEKKCF IEEIPDETMV TGNYKVQLYD PNTKGYGDYP  60
   61 NIGMHVEVKD PEDKVILSKL YTAEGRFTFT SNTPGEHIIC IYSNSTAWFN GAQLRVHLDI 120
  121 QAGDHAQDYA QIAQKDKLNE LQLRIRQLLD QVDQITKEQN YQRYREERFR QTSESTNSRV 180
  181 FYWSIAQVVV LALTGAWQMR HLRGFFEAKK LV

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	179	0.99
Transmembrane Helix	180	199	0.87
Cytoplasmic	200	212	0.84