YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2982301
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGIFDLEK QFAFYGAYHN NAINVLIHTI FVWPIFFTAL VLGCFTPALG LLPFSPGAFP  60
   61 FQEYMILNLS FVVAVVYALF YIMLDKKAGT LAAALCLLCW VSSNSLAQRL GFSLAWKVVL 120
  121 VSQLVCWIGQ FIGHGVFEKR SPALLDNLVQ AFMMAPFFVL LEVLQKFCGY EPYPGFQKAV 180
  181 RAKVQVNIKE WRANKQKKSA

Type	Start	End	Confidence
Cytoplasmic	1	29	0.77
Transmembrane Helix	30	52	0.87
Non-Cytoplasmic	53	63	0.66
Transmembrane Helix	64	83	0.92
Cytoplasmic	84	88	0.72
Transmembrane Helix	89	107	0.82
Non-Cytoplasmic	108	113	0.52
Transmembrane Helix	114	137	0.78
Cytoplasmic	138	147	0.59
Transmembrane Helix	148	164	0.58
Non-Cytoplasmic	165	200	0.49