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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39579473, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLIFILLT LAIELCSPYK VLVFNPAFGA SHSNFLGKIS DILIDAGHEV TMFIPVFVDG  60
   61 KKDLVGSKKV KNIVRLEQDP RIYQMQKEGA TEELMRKKIW TMDSDISAML GFVANFSKTA 120
  121 AYMSDFLFQQ TELIENFRKE KFDLGISESL FVSAFALFDE IGIKSVINAD STLYMSGIKS 180
  181 ALGEPAAIAY YPGLFSPIDD KMTFFGRVKN LMGYQFGMQF STLKYVAEMK ALPKSYKGPR 240
  241 DWQTQLDRVS FNFINSNQYI DYASPTLPKT VFVGGMQVNT KKSGKATLSK EWHDVLSQRK 300
  301 TNVLVSFGSN AFSSDMPDEF KKAFLEVFAA MPDTTFIWKY EEANATLASH LKNVKLTTWM 360
  361 PQNDILADDR LTLFVTHGGL GSSVELAYQG KPAVVIPLMA DQPRNAHMLT RHGGALQLDK 420
  421 ALLDQPDEIR KAIQTVLSDS NYKKNAERLA KILEDQPNKP KDVVLKHCDF AVQFGPLETL 480
  481 NSEGRHLNTF AYYSLDIALA VIVVLLILLY VFHFVVKFVF RLIKRTILRP KKKIHHTEKR 540
  541 QKYQPIFCII GRKSVFLLFI HVSGYKVLVF NPAFGASHSN FLGKISDILI DAGHDVTMLI 600
  601 PISMESKKDL VGTKKLSKVI RIDQDPRSRI MQEEAKTEEM IKKQIWKLDA DITIFFSMIK 660
  661 NFSIASGYQC EHIFQQTAIL DQLRSEKFDL GITESLFLCG FPLFDHIGVK TVINADSVLY 720
  721 LDVVKYAMGE PASTSFYPGV FSKNNDKMNF LDRTRNLFGM AFSWYFSWSR FQGEMEAIKP 780
  781 YYNKSLTWEE HINRAAFYLI NSNQYLDYPS PSLPKTVFIG GMQVNTKKNG KVKLDEDWND 840
  841 LLNQRKQNVL VSFGSNAFSS DMPDEYKKAF LEVFASMPET TFIWKYEEAN ATLADHLPNV 900
  901 KLTTWMPQND LLADDRLTLF VTHGGLGSSV ELAYQGKPAV VIPLMADQPR NAHMLTRHGG 960
  961 ALQLDKALLD QPNEIRKAIQ TVLSDSNYKK NAERLAKILE DQPNKPKDVV LKHCDFAVKF1020
 1021 GDLKTLNSEG RNLNTLQFYS VDIVLSALEV LEAVEHCCML RLVIFPNSSV IYELTFLISF1080
 1081 FHGFYCMMLA IIFALYDDIE HRLTDSKTYL YQMESGKIHF DRELKLNAFS RFYRTAPAPD1140
 1141 ETFKRTIDSD VQSELNKYTH SDAIRFAAKS WTWESNTGEE LPRREDKGIQ TFRFQTGIRA1200
 1201 YYRVLADKGD SYVLIACHAN LHGYHRGDLR FVEVNDTTET QGMGKSSIIG KLYPGDVVAI1260
 1261 VELAKKKNVP LNPPGVFQVH PEFECFWEVR HMTILMRKQD REVNFAIIED GTAVVEGFSR1320
 1321 SMNVLDDSLS TPLEVNKIYF GYAFIPERVK MNFTEDFDRK YENLLTALYS KLPTYAHSSG1380
 1381 TIFTYAPSEM QTRFFKIGRD AFCKHAYRLY GSQPNKVVET CVRMGAAAAQ TIGNNRFDER1440
 1441 SFPIQSVQQD DRIVSFAIPN PEKQPTEGRW SNNTRIVLSG TNRKICAIIE TVVFENDVNF1500
 1501 IRISARIPKD SSRNINFRED TWIVHQGKSP EIPRIDRGFL SRLEENSNGS RIIKTLYGGE1560
 1561 SINLDSSEID LNSSFCFPSS PVIVLNEFQN DYVSKILANV PIVLGNSPFG CGKSMTIVTA1620
 1621 AIEIHKQNGR FNGHGKQRQQ LLVTQSNNAG VSLVEIARKI DSSQVKIKFL RYISENNWNV1680
 1681 LPDSSRTDLD MPKLMRDMFV PWAIGTVERT TSLNFLTIGM KQAIVRKVAQ EYLYPSQLVG1740
 1741 EASRIYDTLN EYDKITEPSP RTLREAFFIF YEPDIIVSTA DSLQGLLSCN LRLQISSIQI1800
 1801 DEASQLPEHT LIYILQRFPH AGYGLVGDIK QLPPHCEKEL KGLLKDYGIG NTMQRAINEL1860
 1861 MFLQSNLLYV YRCHPVTTEL LSDMFYDGSL IPGVSEFDRN EFMRMRPDIW PNVRFPILVL1920
 1921 NQKGEGYKVG TSVANEVEKN YVLRIVSMLT REVNGYRLKE SDIGVISFYR AQTSLLTEAF1980
 1981 RSTDVKCGTI DAFQGSEKEV IIVCCTNKKI SPFMQLGNRL NVALSRSRQA TILIGNVAGL2040
 2041 REAKYWGTIV REAQENQCLI DDVSTELPQK TPYTCTLSQF VSVPLKDIKK NSQNIFDIMI2100
 2101 NQFGVNVGNY SNGNGKLPGN NESSYGNGSV RTKRKIHQRH QANYIVGNQQ EFNPANIWIQ2160
 2161 ERQPRKMNIE NLFR

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