YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39579374, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNMDLLTFVA WILIVGFFYL LTLLALKYKT IRVVLAIIFF LPFAVMLAFF IFRIPQLQKT  60
   61 EAHRQEFFAT WKVGGHRGSA HGDIPENSLE AFSAVKKEGG QLAEMDIQIT KDGVPVICHD 120
  121 ANTVRVTGVD KDISSMNITE FRALRFLNTN VSLPTFEEAV AHCVANNIMM IWDVKNVDEN 180
  181 LLKQFVVQIR THNLYSKVLV SGFNPIDVYK VKLADPKILT GFTWRSWELS TTDESATIPR 240
  241 FTGALNAIAQ VLDVLVFGLA RSLLMPKFLG SDVIFYHVND ISRFLKSDAA SNNIYVAGWT 300
  301 SNNDEEQVWL RDYLNVPFIT DNVGTVPH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.81
Transmembrane Helix	7	26	0.94
Cytoplasmic	27	32	0.79
Transmembrane Helix	33	52	0.95
Non-Cytoplasmic	53	328	0.90