YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3015569
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVLCVLLA GLPFAIFTSR HITSRHTPFQ RGVFCNDESI KYPYKEDTIP  60
   61 YALLGGIIIP FSIIVIILGE TLSVYCNLLH SNSFIRNNYI ATIYKAIGTF LFGAAASQSL 120
  121 TDIAKYSIGR LRPHFLDVCD PDWSKINCSD GYIEYYICRG NAERVKEGRL SFYSGHSSFS 180
  181 MYCMLFVALY LQARMKGDWA RLLRPTLQFG LVAVSIYVGL SRVSDYKHHW SDVLTGLIQG 240
  241 ALVAILVAVY VSDFFKERTS FKERKEEDSH TTLHETPTTG NHYPSNHQP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.84
Transmembrane Helix	9	29	0.92
Non-Cytoplasmic	30	61	0.85
Transmembrane Helix	62	86	0.83
Cytoplasmic	87	100	0.72
Transmembrane Helix	101	120	0.81
Non-Cytoplasmic	121	171	0.83
Transmembrane Helix	172	193	0.84
Cytoplasmic	194	201	0.81
Transmembrane Helix	202	221	0.87
Non-Cytoplasmic	222	232	0.75
Transmembrane Helix	233	255	0.88
Cytoplasmic	256	289	0.92