YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39578893, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKRKSSKP DSPPKRQVSP NSTPNAALGI FLAIARKILF IDARKVALFY LGFVTFLSFL  60
   61 ESRIELDSTY YLVQKHSILN QYGVKMGWFW TLVIVGPFIW FTSKAHHRRD QDQPIIDVCR 120
  121 LGVGTACWYL SVQLFHKIYA ATSVCDKGRR LTRAQCSENE GVWTPGYDIS GHCFLMIYSI 180
  181 LIITEEAVAF RHYQQVTDAV PQMDGDREEH DRLTRLIQYF FVAMLCLHAF WFKQIIISVL 240
  241 YYHIFIEEIL GAVVAVGCWF VTYRIIYKSG FLSSPINRAA SRR

Type	Start	End	Confidence
Cytoplasmic	1	45	0.81
Transmembrane Helix	46	64	0.81
Non-Cytoplasmic	65	85	0.83
Transmembrane Helix	86	103	0.93
Cytoplasmic	104	215	0.82
Transmembrane Helix	216	237	0.86
Non-Cytoplasmic	238	243	0.76
Transmembrane Helix	244	267	0.86
Cytoplasmic	268	283	0.98