YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45385321
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWVLSECG LKPLPRVYPQ ARNGLTSKTA IFANARPLPV CKSNIFGSSL RASNGIRGTN  60
   61 WALNVSAPLR VPSVDGGDNG RVSVNGVEDG SDFDPGAPPP FNLADIRAAI PKHLWVKDPW 120
  121 RSMSYVVRDV AVVLGLAAVA AYFNNWVVWP LYWFAQGTMF WALFVLGHDC GHGSFSNNPK 180
  181 LSSVVGHLLH SSILVPYHGW RISHRTHHQN HGHVENDESW HPLSEKVYKT LDKATQMLRF 240
  241 TLPFPMLAYP FYLWGRSPGK SGSHFDPNSD LFVPNERKDI ITSTACWTAM AGLLVGLSFV 300
  301 MGPVQMLKLY GVPYWLFVMW LDLVTYLHHH GHEDKLPWYR GKEWSYLRGG LTTLDRDYGL 360
  361 INNIHHDIGT HVIHHLFPQI PHYNLVEATE AAKPVLGKYY REPKKSGPLP LHLLGVLIRS 420
  421 MKRDHYVSDT GDVVYYQTDK KLPGSVTSE

Type	Start	End	Confidence
Cytoplasmic	1	124	0.99
Transmembrane Helix	125	143	0.92
Non-Cytoplasmic	144	151	0.62
Transmembrane Helix	152	171	0.72
Cytoplasmic	172	280	0.75
Transmembrane Helix	281	304	0.83
Non-Cytoplasmic	305	310	0.65
Transmembrane Helix	311	330	0.80
Cytoplasmic	331	449	0.84