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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25013136
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIEAIERVVS RLQIKVVPYI VLLVVPLLGA MSDPDESVRL LSTHCFANLV QLMPLDGKTE  60
   61 QLKSDPLQAR KTRDREFLDY LFNPKSIPNY KVPVPISVEL RCYQQAGINW LWFLNKYNLH 120
  121 GILCDDMGLG KTLQTICILA GDHMHRQTAN LANLPSLVIC PPTLTGHWVY EVEKFLDQGS 180
  181 VLRPLHYYGF PVGREKLRSD IGTKCNLVVA SYDTVRKDID FFSGIHFNYC VLDEGHIIKN 240
  241 GKTKSSKAIK RLKANHRLIL SGTPIQNNVL ELWSLFDFLM PGFLGTEKQF VQRFSRPILS 300
  301 SRDAKSSAKE QEAGVLAMEA LHRQVLPFLL RRVKEDVLKD LPPKITQDLL CELSPLQLRL 360
  361 YEDFSNKHLK DCLDKLGDSS SASMVTENLS AKTHIFQALR YLQNVCNHPK LVLRQSEELT 420
  421 KVTSQLALSN SSLDDIEHSA KLPALKQLLL DCGIGVQTES VSQHRALIFC QLKAMLDIVE 480
  481 QDLLRRHLPS VTYLRLDGSV PASQRQDIVN NFNSDPSIDV LLLTTMVGGL GLNLTGADTV 540
  541 IFVEHDWNPM KDLQAMDRAH RIGQKKVVNV YRLITRNSLE EKIMGLQKFK ILTANTVVSA 600
  601 ENASLQTMGT SQIFDLFNGG KDKGAESGSS AVQGTASGGM SMNTIIENLP ELWSEHQYEE 660
  661 EYDLGNFVQA LKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle