YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3342209
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPGGGPLHT SRGAMAMLAR KFPRTRLPVG ASALCVVVLC WLYVFPVYRL PNEKEIVQGV  60
   61 LAQRTAWRRN QTSARLFRKQ MEDCCNPAHL FAMTKVNSPM GKSLWYDGEF LYSLTIDTST 120
  121 YSLFPQATPF QLPLKKCAVV GNGGILKMSG CGRQIDEANF VMRCNLPPLS SEYTRDVGSK 180
  181 TQLVTANPSI IRQRFENLLW SRKKFVDNMK IYNHSYIYMP AFSMKTGTEP SLRVYYTLKD 240
  241 AGANQTVLFA NPNFLRNIGK FWKGRGIHAK RLSTGLFLVS AALGLCEEVS IYGFWPFSVN 300
  301 MQGEPISHHY YDNVLPFSGF HAMPEEFLQL WYLHKMGALR MQLDPCENPP SPQPTS

Type	Start	End	Confidence
Cytoplasmic	1	24	0.79
Transmembrane Helix	25	45	0.83
Non-Cytoplasmic	46	356	0.87