YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25012863
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRGQAVFGDR RTFPSDSRMQ LILVATLLCL IIGSCSASIS GPFIFWGHSR VSSQQTQALV  60
   61 ESSSRELPLT QLFTEAKAIV VLVRNTTNRL EGTRYPKFQN LVKSGAWTYL PQRSLAAEPF 120
  121 GLNANIEVVS LSGHGEEDDS EILLAYNEAV NTYGRGEVLG ILGSREEEAH FLAKREAAPG 180
  181 GEEEEKAKAA EGSEETEASF IYVAEGNKAV LSLNGPLELR VTNDTLKLEE HIKQITFDDQ 240
  241 RAKGYGRLSI TFMHSGEKCT LRFKFSLIRG SWTLRNVEVE YRELKSVLVA RGDEYTLPSA 300
  301 PLGFSYRCSA ESVNFLNPAR NETIQSLLLS DFQVQPWLNG RPEYGEVYDC IGFVSAPILA 360
  361 GLFVVTLLLG ILGLGISAML SMHTPNRFES SRSKQLTFTV QE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	46	0.94
Non-Cytoplasmic	47	358	0.96
Transmembrane Helix	359	382	0.87
Cytoplasmic	383	402	0.92