YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25012605
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.96
Transmembrane Helix	93	116	0.72
Non-Cytoplasmic	117	122	0.55
Transmembrane Helix	123	146	0.82
Cytoplasmic	147	165	0.70
Transmembrane Helix	166	192	0.79
Non-Cytoplasmic	193	251	0.96
Transmembrane Helix	252	272	0.92
Cytoplasmic	273	280	0.81
Transmembrane Helix	281	303	0.89
Non-Cytoplasmic	304	325	0.91
Transmembrane Helix	326	348	0.87
Cytoplasmic	349	364	0.81
Transmembrane Helix	365	386	0.94
Non-Cytoplasmic	387	425	0.95
Transmembrane Helix	426	450	0.85
Cytoplasmic	451	465	0.86
Transmembrane Helix	466	489	0.88
Non-Cytoplasmic	490	498	0.89
Transmembrane Helix	499	519	0.96
Cytoplasmic	520	539	0.96
Transmembrane Helix	540	561	0.96
Non-Cytoplasmic	562	569	0.86
Transmembrane Helix	570	592	0.89
Cytoplasmic	593	641	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGICGEQLN NCMLLGDCEN SEHGTELPGD FIGEPVETES GGGMGGSLAL AARRIRSRQV  60
   61 HSMAVRTGSA YDTLERPYRH DKCRGRWAKS ADFYFASCTH AFSSLIFSEL STFGILHGGW 120
  121 LLFIIAYLMG MLFYSLPIFL IQAFLGQFSS SGTISAFRVA PIFKGIGYAI LLLNLGTLTY 180
  181 YSIAAVVPLI YTVNSIHPVI PWMSCNNSWN TQECSLHENY DVDDYRVDPH STVEFFRSMI 240
  241 ASTAKGSTSM SISWSMLIGV LSIWLVVLAL LLKPVAFIGK VLRCSCVLMF GFFVAVFLYL 300
  301 LIHEQITFDT LHYYWMPQLD SFDSILATAR TALLMAGGAL GPGWGSIITL SSYNNFRRDA 360
  361 ERLSIWVCLT HITIGLMGLL CCNVAHDHFE DHVGMMPLHV DEKHHMQFLY LCFSYLFGRF 420
  421 TTTPNLWAFL FFGMIFLSEL CALIIQMMSV ITALFDEFET LRSRRILVIS SLVFCLTASS 480
  481 VYFCTQLGFS QLTQLPNLAV FTHLLISGIL VLMTTWVYGR VRFQCDLQFM LGKTISSFKI 540
  541 FFIRFATPIF LGLCLFQLTY LFTRDRIHDV LIYVSQGLIL LTAISYMVYK VCRTNGDWRQ 600
  601 RLQQCLAPHD WHPVDADNRR FYEEIMGISE MLVIDANANT T