YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3150056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAGTMVLTQT SSHSLRYFYT ALSRPGLGEP RFIVVGYVDD TQFVRYDSDV ENPRMEPRAR  60
   61 WMEQEEPAYW ERETRKARDT GRNFKVNLRT LLRYYNQSDD ESHTLQWMYG CDVGPDGHLL 120
  121 RGYCQEAYDG RDYISLNEDL RSWTATDMAS QASKIKSEEV GEAHHQRAYL QGPCVEWLHT 180
  181 YLHLGKETLL RSDPPKAHVT LHPRPEGDVT LRCWALGFYP ADITLTWQLN GEDLTQDMEL 240
  241 VETRPAGDGT FQKWAAVVVP SGEELKYTCH VEHEGLPEPL ALRWEPSPFT DSSMPVIVVL 300
  301 GAVAIIGAVA IIGAVAIIGA VVRRRKRNTG EKGSYAHVLG SKAFQISDWP QKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	295	0.98
Transmembrane Helix	296	320	0.93
Cytoplasmic	321	353	0.96