YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25012556
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPSKLSQV LSYQNFVHAV SGAAGGCIAM STFYPLDTVR SRLQLEEAGD VRSTMQVIKE  60
   61 IVLGDGFQSL YRGLGPVLQS LCISNFVYFY TFHALKAVAS GGSPSQHSAL KDLLLGSIAG 120
  121 IINVLTTTPF WVVNTRLRMR NVAGTSDEVN KHYKNLLEGL KYVAEKEGIA GLWSGTIPSL 180
  181 MLVSNPALQF MMYEMLKRNI MRFTGGEMGS LSFFFIGAIA KAFATVLTYP LQLVQTKQRH 240
  241 RSKESDSKPS TSAGSTPRTE STLELMISIL QHQGIRGLFR GLEAKILQTV LTAALMFMAY 300
  301 EKIAGTVGML LKRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.47
Transmembrane Helix	16	36	0.82
Cytoplasmic	37	72	0.55
Transmembrane Helix	73	94	0.72
Non-Cytoplasmic	95	112	0.53
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	168	0.60
Transmembrane Helix	169	191	0.77
Non-Cytoplasmic	192	208	0.50
Transmembrane Helix	209	233	0.80
Cytoplasmic	234	285	0.52
Transmembrane Helix	286	304	0.48
Non-Cytoplasmic	305	314	0.50