YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25012387
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVFMRIFN LICMMLLIGH WSGCLQFLVP MLQGFPSNSW VSINELQESY WLEQYSWALF  60
   61 KAMSHMLCIG YGRFPPQSLT DMWLTMLSMI SGATCYALFL GHATNLIQSL DSSRRQYREK 120
  121 VKQVEEYMAY RKLPRDMRQR ITEYFEHRYQ GKFFDEELIL GELSEKLRED VINYNCRSLV 180
  181 ASVPFFANAD SNFVSDVVTK LKYEVFQPGD IIIKEGTIGT KMYFIQEGVV DIVMANGEVA 240
  241 TSLSDGSYFG EICLLTNARR VASVRAETYC NLFSLSVDHF NCVLDQYPLM RKTMETVAAE 300
  301 RLNKIGKNPN IMHQKDEQLS NPESNTITAV VNALAAEADD CKDDDMDLKE NLLHGSESSI 360
  361 AEPVQTIREG LPRPRSGEFR ALFEGNTP

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	30	0.90
Non-Cytoplasmic	31	56	0.86
Transmembrane Helix	57	74	0.87
Cytoplasmic	75	82	0.80
Transmembrane Helix	83	104	0.93
Non-Cytoplasmic	105	388	0.93