YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25012350
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.94
Transmembrane Helix	101	125	0.84
Non-Cytoplasmic	126	132	0.76
Transmembrane Helix	133	163	0.71
Cytoplasmic	164	174	0.70
Transmembrane Helix	175	198	0.89
Non-Cytoplasmic	199	245	0.54
Transmembrane Helix	246	266	0.69
Cytoplasmic	267	283	0.78
Transmembrane Helix	284	307	0.88
Non-Cytoplasmic	308	352	0.72
Transmembrane Helix	353	376	0.82
Cytoplasmic	377	387	0.69
Transmembrane Helix	388	410	0.85
Non-Cytoplasmic	411	423	0.55
Transmembrane Helix	424	444	0.89
Cytoplasmic	445	449	0.55
Transmembrane Helix	450	469	0.89
Non-Cytoplasmic	470	482	0.59
Transmembrane Helix	483	512	0.83
Cytoplasmic	513	642	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTMRWPRKHT FGLWPKRNGR NRSSGEATGG QPQATVATIY DPGCEEKEKY TAQNGDDYYG  60
   61 QAHTVDLDVA SKYSKPKEAH WLVRRIFFLS WITSYDREQA FADLIAGITL GLTIIPQSIA 120
  121 YAALAGLSSE YGLYSAFIGS IIYVFFGTIP QVSIGPTSLM AILTLQFCAD KPVQVVIVLA 180
  181 FLAGLVELAM GVFQLGFIVS FIPAPVTKAF TSGTALIVVF AQIKNLLGVR IKGFPSIGDF 240
  241 FTNIRPTDAA MGISCMVVLL SLRLLSQVNF KQDTPVTRRL KKILWYISIS RNALVVFFTG 300
  301 LLVFIWVKKS SIEAVPFALS SKVSSAMPTI KLPPFAFEYQ NRTYVFTDIL HELGSGIVVV 360
  361 PIVAVLANVA IAKAFVKDGN LDASQEMLTL GLCNIAGSFF SAMPTCGAFT RSAVSQASGV 420
  421 RTPMAGIYTG LIVLSALSIL TPYFQYIPKA SLSAVLIAAV IFMIDLAPVK ELWQTNKKDF 480
  481 FSWVGSFIIC LVAGVELGLL FGIVLSMVFI LLRLGNPKFE VTLKQHESTY YVHIVPQSDV 540
  541 YYTGVDALRS ELRGACRLYH NDFPVVLDCA RFMQFDATFS EMLISVAKEM ASHDVLLILQ 600
  601 NMSLKVQQML PVMGNVRFCQ EDSQLSSHLQ VEKEAPVVEA KL